Publication List of 莊曜宇 Eric Y. Chuang

Journal articles & book chapters:

  1. Zhanjun Guo, Mong-Hsun Tsai, Yih-Horng Shiao, Li-Han Chen, Mei-Ling Wei, Xing Lv, David Gius, John B. Little, James B. Mitchell, Eric Y. Chuang., “DNA (cytosine-5)-methyltransferase 1 as a mediator of mutant p53-determined p16ink4A down-regulation.,” J Biomed Sci, 15, 163-168, 2008
  2. Chen HI, Hsu FH, Jiang Y, et al., “A probe-density-based analysis method for array CGH data: simulation, normalization and centralization,” Bioinformatics, 24(16), 1749-56, 2008
  3. David Gius, Margo C. Funk, Eric Y. Chuang, Sheng Feng, Phyllis C. Huettner, Loan Nguyen, C. Matthew Bradbury, Mark Mishra, Shuping Gao, Barbara M. Buttin, David E. Cohn, Matthew A. Powell, Neil S. Horowitz, Bradford P. Whitcomb and Janet S. Rader., “Profiling Microdissected Epithelium and Stroma to ModelGenomic Signatures for Cervical Carcinogenesis Accommodating for Covariates.,” Cancer Res., 67, 7113-7123, Aug. 2007
  4. Y.F. Lin, C.Y. Chen, M.H. Tsai, M.S. Wu, Y.C. Wang, E.Y. Chuang, J.T. Lin, P.C. Yang, L.P. Chow, “Duodenal ulcer-related antigens from Helicobacter pylori: immunoproteome and protein microarray approaches,” Mol Cell Proteomics, 6, 1018-1026, 2007
  5. M.-H. Tsai, J.A. Cook, G.V.R. Chandramouli, W. DeGraff, H. Yan, S. Zhao, C.N. Coleman, J.B. Mitchell, E.Y. Chuang, “Gene Expression Profiling of Breast, Prostate, and Glioma Cells Following Single Versus Fractionated Doses of Radiation,” Cancer Res., 67, 3845-3852, 2007
  6. M.-H. Tsai, X. Chen, G. V. R. Chandramouli, Y. Chen, H. Yan, S. Zhao, P. Keng, H. L. Liber, C. N. Coleman, J. B. Mitchell, and E. Y. Chuang, “Transcriptional Responses to Ionizing Radiation Reveal that p53R2 Protects Against Radiation-induced Mutagenesis in Human Lymphoblastoid Cells,” Oncogene, 25, 622-32, 2006
  7. E. Y. Chuang, X. Chen, M.-H. Tsai, H. Yan, C.-Y. Li, J. B. Mitchell, H. Nagasawa, P. F. Wilson, Y. Peng, J. S. Bedford, and J. B. Little, “Abnormal Gene Expression Profiles in Unaffected Parents of Patients with Hereditary Type Retinoblastoma,” Cancer Res., 66, 3428-33, 2006
  8. W. Zhao*, E.Y. Chuang*, M. Mishra, R. Awwad, K. Bisht, L. Sun, P. Nguyen, J.D. Pennington, T.J. Wang, C.M. Bradbury, L. Huang, Z. Chen, G. Bar-Sela, M.E. Robbins, D. Gius, “Distinct effects of ionizing radiation on in vivo murine kidney and brain normal tissue gene expression,” Clin Cancer Res, 12, 3823-3830, 2006
  9. J. A. Cook, E. Y. Chuang, M. H. Tsai, D. Coffin, W. Degraff, A. L. Sowers, and J. B. Mitchell, “Radiation-induced changes in gene-expression profiles for the SCC VII tumor cells grown in vitro and in vivo,” Antioxid Redox Signal, 8, 1263-72, 2006
  10. A. M. Samuni, U. Kasid, E. Y. Chuang, S. Suy, W. DeGraff, M. C. Krishna, A. Russo, J. B. Mitchell., “Effects of Hypoxia on Radiation-Responsive Stress-Activated Protein Kinase, p53, and Caspase 3 Signals in TK6 Human Lymphoblastoid Cells.,” Cancer Res, 65, 579-586, 2005
  11. M.-H. Tsai, H. Yan, G. V. R. Chandramouli, S. Zhao, D. Coffin, C. N. Coleman, J. B. Mitchell, and E. Y. Chuang., “Evaluation of Hybridization Conditions for Spotted Oligonucleotide Based DNA Microarrays.,” Mol. Biotechnol., 29, 221-224., 2005
  12. K. K. Tsai, E. Y. Chuang, J. B. Little, and Z.-M. Yuan, “Cellular Mechanisms for Low-Dose Radiation-Induced Perturbation of the Breast Tissue Microenvironment,” Cancer Res., 65,, 6734-6744., 2005
  13. H. Ge, Y. E. Chuang, S. Zhao, M. Tong, M.-H. Tsai, J. J. Temenak A. L. Richards and W.-M. Ching, “ Comparative Genomics of Rickettsia prowazekii Madrid E and Breinl Strains.,” J. Bacteriol., 186, 556-565., 2004
  14. E. M. Goley, S. J. Anderson, C. Menard, E. Chuang, X. Lu, P. J. Tofilon, and K. Camphausen, “Microarray Analysis in Clinical Oncology: Pre-Clinical Optimization Using Needle Core Biopsies from Xenograft Tumors.,” BMC Cancer, 19, 4:20., 2004
  15. X. Lu, W. E. Burgan, M. A. Cerra, E. Y. Chuang, M.-H. Tsai, P. J. Tofilon, and K. Camphausen, “Transcriptional Signature of Flavopiridol-induced Tumor Cell Death.,” Mol. Cancer Ther., 3, 861-872., 2004
  16. A. Rosenwald, E. Y. Chuang, R. E. Davis, A. Wiestner, A. A. Alizadeh, D. C. Arthur, J. B. Mitchell, G. E. Marti, D. H. Fowler, W. H. Wilson, and L. M. Staudt, “Fludarabine Treatment of Chronic Lymphocytic Leukemia Patients Induces a p53-Dependent Gene Expression Response,” Blood, 104, 1428-1434., 2004
  17. L. E. Dodd, E. L. Korn, L. M. McShane, G. V. Chandramouli, E. Y. Chuang, “Correction Log Ratios for Signal Saturation in cDNA Microarrays.,” Bioinformatics, 20, 2685-2693, 2004
  18. A. Loercher, T. L. Lee, J. L. Ricker, A. Howard, J. Geoghegen, Z. Chen, J. Sunwoo, E. Y. Chuang, J. B. Mitchell, A. S. Baldwin, Jr., and C. Van Waes., “Nuclear factor-kB is an Important Modulator of the Altered Gene Expression Profile and Malignant Phenotype in Squamous Cell Carcinoma,” Cancer Res, 64, 6511-6523., 2004
  19. D. Gius, H. Cui, C. M. Bradbury, J. Cook, D. K. Smart, S. Zhao, L. Young, S. A. Brandenburg, Y. Hu, K. S. Bisht, A. S. Ho, D. Mattson, L. Sun, P. J. Munson, E. Y. Chuang, J. B. Mitchell, A. P. Feinberg., “ Distinct Effects on Gene Expression of Chemical and Genetic Manipulation of the Cancer Epigenome Revealed by a Multimodality Approach.,” Cancer Cell, 6, 361-371., 2004
  20. M. Lu, J. Suen, C. Frias, R. Pfeiffer, M.-H. Tsai, E. Chuang, and S. L. Zeichner., “Dissection of the Kaposi's Sarcoma-associated Herpesvirus GeneExpression Program Using the Viral DNA Replication Inhibitor Cidofovir,” J. Virol., 78, 13637-13652., 2004
  21. A. M. Samuni*, E. Y. Chuang*, M. C. Krishna, W. Stein, W. DeGraff, A. Russo, J. B. Mitchell, “Semiquinone Radical Intermediate in Catecholic Estrogen-Mediated Cytotoxicity and Mutagenesis: Chemoprevention Strategies with Antioxidants,” PNAS, 100, 5390-5395, 2003
  22. H. Ge, Y. E. Chuang, S. Zhao, J. J. Temenak and W. Ching, “Genomic Studies of Rickettsia Prowazekii Virulent vs. Avirulent Strains.,” Ann. NY Acad. Sci, 990, 671-677., 2003
  23. H. Su, N. Hu, J. Shih, Y. Hu, Q.-H. Wang, E. Y. Chuang, M. J. Roth, C. Wang, A. M. Goldstein, T. Ding, S. M. Dawsey, C. Giffen, M. R. Emmert-Buck, P. R. Taylor, “Gene Expression Analysis of Esophageal Squamous Cell Carcinoma Reveals Consistent Molecular Profiles Related to a Family History of Upper Gastrointestinal Cancer,” Cancer Res, 63, 3872-3876., 2003
  24. Y. E. Chuang, Y. Chen, C. V. Gadisetti, J. Cook, D. Coffin, M. Tsai, W. DeGraff, H. Yan, S. Zhao, A. Russo, E. T. Liu and J. B. Mitchell, “Gene Expression After Treatment with Hydrogen Peroxide, Menadione, or t-Butyl Hydroperoxide in Breast Cancer Cells,” Cancer Res., 62, 6246-6254., 2002
  25. Y. E. Chuang, Qi Chen and H. L. Liber, “Radiation-induced mutations at the autosomal thymidine kinase locus are not elevated in p53-null cells.,” Cancer Res., 59, 3073-3076., 1999
  26. Y. Chuang and H.L. Liber, “Effects of cell cycle position on ionizing radiation mutagenesis. I. Quantitative assays of two genetic loci in a human lymphoblastoid cell line.,” Radiat., Res. 146, 494-500., 1996